Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgaaatctgatctcgatttatcttttattgatataatttgtatgtatagAGTAGCCATTCACGAGGCTATGGAACAGCAAACAATCTCTATAGCCAAGGCTGGCATTACTACGGTTTTAAATTCACGAACATCAGTACTGGCCGCAGCC

Basic information

species Selaginella moellendorffii
transcript EFJ17142
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31205 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: LOC_Os02g55410.2 (Oryza sativa), 3'ss of exon 11
-----------------------------------------------------gtaaatgaaatctgatctcga---tttatcttttattgatataattt------gtatgtatagAGTAGCCATTCACGAGGCTATGGAACAGCAAACAATCTCTATAGCCAAGGCTGGCATTACTACGGTTTTAAATTCACGAACATCAGTACTGGCCGCAGCC
                                                     |||| |      |  |||  |   || |     ||||||  ||  ||      ||   |  ||||| || |||||||| || ||||||||||| || ||||| || ||||| ||||||||||| || ||  | |||||| | || || ||||| || || |||
gtaagcattgatctatagtcttctttctagaaactaaaataagcattgcacatgtaatttttccttactcttcaaagttgaaaccatattgagttacctttatgctgtgattccagAGTTGCAATTCACGAAGCAATGGAACAGCAGACCATCTCGATTGCCAAAGCTGGCATTACAACAGTACTCAATTCAAGGACCTCGGTACTAGCAGCTGCC

upper sequence: EFJ31205 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GRMZM2G450055_T01 (Zea mays), 3'ss of exon 11
--------------------------------------------------------------gtaaatgaaatctgatctcgatttatctt-ttattgatataatttgtatgtatagAGTAGCCATTCACGAGGCTATGGAACAGCAAACAATCTCTATAGCCAAGGCTGGCATTACTACGGTTTTAAATTCACGAACATCAGTACTGGCCGCAGCC
                                                              ||       |||  |     ||| | |   |      | |  | || |  |  ||||| || ||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| || ||  | |||||| | || ||||| || || || |||
gtatgctgatcaatttatatttttggtgacactaaaataaacatagtagatcttctttcttggtctgctctatcgaaggctcattaacccagtcccctctttcttatgcaattccagAGTGGCGATTCATGAGGCCATGGAGCAGCAGACAATATCTATTGCCAAAGCTGGCATTACAACAGTACTCAATTCAAGGACTTCAGTTCTTGCAGCTGCC

upper sequence: EFJ31205 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GRMZM2G075978_T01 (Zea mays), 3'ss of exon 11
-----------------------------------------------------------------gtaaatgaaatctgatctcgatttatcttttattgatataatttgtatgtatagAGTAGCCATTCACGAGGCTATGGAACAGCAAACAATCTCTATAGCCAAGGCTGGCATTACTACGGTTTTAAATTCACGAACATCAGTACTGGCCGCAGCC
                                                                 ||  |    |||  | |   | | | | | |     | |  | || |  |  ||||| || ||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| || ||  | |||||| | || ||||| || || || |||
gtaggcatcaatctatatgtttgatgaaagaaattggaacaggcatagtatatcttctctccttggtctactctatcaaaaccacagtaaccatgtccccttctcttatgcaattccagAGTTGCAATTCATGAGGCCATGGAGCAGCAGACAATATCTATTGCCAAAGCTGGCATTACAACAGTACTCAATTCAAGGACTTCAGTTCTTGCAGCTGCC

upper sequence: EFJ31205 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 10
------------------------gtaaatgaaatctgatc-tcgatttatctttta--ttgatataatttgtatg-tatagAGTAGCCATTCACGAGGCTATGGAACAGCAAACAATCTCTATAGCCAAGGCTGGCATTACTACGGTTTTAAATTCACGAACATCAGTACTGGCCGCAGCC
                         |   |      | ||  | |||||||     |  || ||||  | |  ||| | |||||| || ||||||||||| |||||||| ||||| || ||||||||||| ||||| || || || ||| | |||||| | || ||||| || || || |||
gtacttagtgtctgatgtttttttatttctaggtcatcattgttgatttatgacgaaattttatatggtctccatgatgtagAGTTGCTATTCACGAGGCCATGGAACAACAAACTATATCTATAGCCAAAGCTGGAATAACAACTGTTCTTAATTCAAGGACTTCAGTTCTTGCTGCTGCC

upper sequence: EFJ31205 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GLYMA17G11220.1 (Glycine max), 3'ss of exon 10
----------------------gtaaatgaaatctgatc-tcgatttatctttta--ttgatataatttgtatg-tatagAGTAGCCATTCACGAGGCTATGGAACAGCAAACAATCTCTATAGCCAAGGCTGGCATTACTACGGTTTTAAATTCACGAACATCAGTACTGGCCGCAGCC
                       |   |      | ||  | ||||||      |  || ||||  ||| |||| | |||||| |||||||| ||||| |||||||| ||||| || ||||||||||| || || || || || ||| | |||||| | || ||||| || || || |||
gtacttggtgtctgacattttgatttctaggtcatcattgttgatttaagacgaaattttatatggtttctatgatgtagAGTTGCCATTCATGAGGCCATGGAACAACAAACTATATCTATAGCCAAAGCAGGAATAACAACTGTTCTTAATTCAAGGACTTCAGTTCTTGCTGCTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatgaaatctgatctcgatttatcttttattgatataatttgtatgtatagAGTAGCCATTCACGAGGCTATGGAACAGCAAACAATCTCTATAGCCAAGGCTGGCATTACTACGGTTTTAAATTCACGAACATCAGTACTGGCCGCAGCC
                               tattgat  putative branch site (score: 3)
                      atttatcttttattga  TA-rich tract