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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctctgcattagctattttacatactttagatccaattgtgatcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAAGGATCAAACTCCTGAAA

Basic information

species Selaginella moellendorffii
transcript EFJ17122
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17122 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GLYMA07G36680.1 (Glycine max), 3'ss of exon 12
---------------gtaacctctgcattagctattttac----atactt-tagatccaattgtg-atcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAA---GGATCA-AACTCCTGAAA
                |  | |||   ||  |   || |     ||| || | ||   | || |  || ||  ||||   ||| ||||| ||||  ||||||||||| ||||  ||||||||||||||||| |||||||| || || ||   ||| ||    ||| | || ||||    
gttatatttaaattcattgcttctttgtttacctcttcatttgaatatttattgagggagttctttattttacagGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAATCAAGATGATAAGTCCT----

upper sequence: EFJ17122 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 12
---------------gtaacctctgcattagctatttt------acatactt-tagatccaattgtg-atcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAAG---GATCA-AACTCCTGAAA
                |  | |||   ||  |   ||       | ||| || | ||   | || |  || ||  ||||   ||| ||||| ||||  ||||||||||| ||||  ||||||||||||||||| |||||||| || || ||   ||| |||   ||| | || ||||    
gttatatttatattcattgcttctttgtttacctcttcatttgaatatatttattgagggagttctttattttacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCT----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacctctgcattagctattttacatactttagatccaattgtgatcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAAGGATCAAACTCCTGAAA
                                               tcttct  CT-rich tract
                  tattttacatacttta  TA-rich tract