1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagaatctttcaattacttgctccggtagtttggcaactccgcttgctttgtgcagGTGCCATGAAGCAGAGCTAAAACTGGACGAAAGGGAAAGACATCCTGTCAATAGCAAGGAAATGCATTATCTAACTCCG
species | Selaginella moellendorffii |
transcript | EFJ15241 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGCTGCCGCTGGGTTTGCCGGCCTTGTAAGACCTTTCAGCTTTGTGATAG GTGCCATGAAGCAGAGCTAANACTGGACGAAAGGGAAAGACATCCTGTEST: gi|169081871|gb|FE486418.1|FE486418
genomic: GGCTGCCGCTGGGTTTGCCGGCCTTGTAAGACCTTTCAGCTTTGTGATAGgtaagaatct ... ctttgtgcagGTGCCATGAAGCAGAGCTAAAACTGGACGAAAGGGAAAGACATCCTGT
EST: GGCTGCCGCTGGGTTTGCCGGCCTTGTAAGACCTTTCAGCTTTGTGATAG GTGCCATGAAGCAGAGCTAAAACTGGACGAAAGGGAAAGACATCCTNNGTCEST: gi|169083946|gb|FE493586.1|FE493586
genomic: GGCTGCCGCTGGGTTTGCCGGCCTTGTAAGACCTTTCAGCTTTGTGATAGgtaagaatct ... ctttgtgcagGTGCCATGAAGCAGAGCTAAAACTGGACGAAAGGGAAAGACATCCT--GTC
EST: GGCTGCCGCTGGGTTTGCCGGCCTTGTAAGACCTTTCAGCTTTGTGATAG GTGCCATGAAGCAGAGCTAAAACTGGACGEST: gi|169051768|gb|FE457949.1|FE457949
genomic: GGCTGCCGCTGGGTTTGCCGGCCTTGTAAGACCTTTCAGCTTTGTGATAGgtaagaatct ... ctttgtgcagGTGCCATGAAGCAGAGCTAAAACTGGACG
EST: GGCTGCCGCTGGGTTTGCCGGCCCTGTAAGAGCTTTCAGCTTTGTGATAG GTGCCATGAAGCAGAGCTAAAACTGGACGAAAGGGAAAGACATCCTGCCAA
genomic: GGCTGCCGCTGGGTTTGCCGGCCTTGTAAGACCTTTCAGCTTTGTGATAGgtaagaatct ... ctttgtgcagGTGCCATGAAGCAGAGCTAAAACTGGACGAAAGGGAAAGACATCCTGTCAA
agaatctttcaattacttgctccggtagtttggcaactccgcttgctttgtgcagGTGCCATGAAGCAGAGCTAAAACTGGACGAAAGGGAAAGACATCCTGTCAATAGCAAGGAAATGCATTATCTAACTCCG
cttgcttt CT-rich tract
tttcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatctttcaattacttgctccggtagtttggcaactccgcttgctttgtgcagGTGCCATGAAGCAGAGCTAAAACTGGACGAAAGGGAAAGACATCCTGTCAATAGCAAGGAAATGCATTATCTAACTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA