Sequence
atgc intronic sequence ATGC exonic sequencegtacgtctcccttttaaattttcgaatttgaaatttcccggtctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAGTCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ12574 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ12574 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GRMZM2G412276_T01 (Zea mays), 3'ss of exon 10
--------------------------------------gtacgtctcccttttaaattttcgaatttgaaatttcccggtctgttttctgtgttgc-------gcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAGTCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
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gttgctcctttttttttaataatttggacacatttcttccacctgaccgacgcagagcttgatctcaataatgccattatatatataatatattatcctcgctgcagACTGTCGCGCTGGTCGGAGAGAGTGGAAGCGGCAAGTCGACGGTGATCGCCCTGCTCGAAAGGTTCTACGACCCGGAATCCGGCAAGATCTTCATCGACG
upper sequence: EFJ12574 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 11
-------------gtacgtctcccttttaaatttt----cga-----------atttgaaatttcc--cggtctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAGTCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
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gtacggaacctctcagcgttttcctttatagttttactgcgatcagcagagctactagcagttaccagcaggcagttaactttgacg-gcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169039516|gb|FE449178.1|FE449178EST: ACGAGGCGGAGATCTTCCGAAACTTGAGCTTTTCCATCCCCGCGGGCAAG ACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAATCCACAGTCATCTCG
genomic: ACGAGGCGGAGATCTTCCGAAACTTGAGCTTCTCCATCCCCGCGGGCAAGgtacgtctcc ... tgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAGTCCACAGTCATCTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcccttttaaattttcgaatttgaaatttcccggtctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAGTCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
ttttctgt CT-rich tract
tttaaattttcgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgtctcccttttaaattttcgaatttgaaatttcccggtctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAGTCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG