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gtgggattgagtataatttcaaggaatttactgaagcgaatctccattctatcagGTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTACCTTGGTCATGCTGAAGAAGTAGCCGAGGAACATGTGGCCGATGATGATG
species | Selaginella moellendorffii |
transcript | EFJ12438 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCGGAAGGAGGACCTACGGCATGTGGCCAAGGCAACTGGTGCTACAATG GTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTTCT-AEST: gi|169065291|gb|FE473192.1|FE473192
genomic: TTCGGAAGGAGGACCTGCGGCATGTGGCCAAGGCAACTGGTGCTACAATGgtgggattga ... attctatcagGTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTT-CTTA
EST: GAAGGAGGACCTACGGCATGTGGCCAAGGCAACTGGTGCTACAAT- GTTGTTACTCTGCCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTACEST: gi|169108185|gb|FE512558.1|FE512558
genomic: GAAGGAGGACCTGCGGCATGTGGCCAAGGCAACTGGTGCTACAATGgtgggattga ... attctatcagGTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTAC
EST: CGGAAGGAGGACCTGCGGCATGTGGCCAAGGCAACTGGTGCTACAATG GTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTACEST: gi|169042175|gb|FE454218.1|FE454218
genomic: CGGAAGGAGGACCTGCGGCATGTGGCCAAGGCAACTGGTGCTACAATGgtgggattga ... attctatcagGTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTAC
EST: GCGGCATGT-GCCAAAGGCAACTGGTGCTACAATG GTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTACEST: gi|169108186|gb|FE512559.1|FE512559
genomic: GCGGCATGTGGCC-AAGGCAACTGGTGCTACAATGgtgggattga ... attctatcagGTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTAC
EST: TTCGGAAGGAGGACCTGCGGCATGTGGCCAAGGCAACTGGTGCTACAATG GTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTAC
genomic: TTCGGAAGGAGGACCTGCGGCATGTGGCCAAGGCAACTGGTGCTACAATGgtgggattga ... attctatcagGTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTAC
gtgggattgagtataatttcaaggaatttactgaagcgaatctccattctatcagGTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTACCTTGGTCATGCTGAAGAAGTAGCCGAGGAACATGTGGCCGATGATGATG
tctccattct CT-rich tract
attgagtataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggattgagtataatttcaaggaatttactgaagcgaatctccattctatcagGTTGTTACTCTGGCCGATATGGAAGGCGGCGAGTCATTTGACCCTTCTTACCTTGGTCATGCTGAAGAAGTAGCCGAGGAACATGTGGCCGATGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT