1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtcagttctgctatctttcgtcagattcttaaggtattggtcgattacagATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATGTATGAAAAGGAGTCAATAGAAAGCAG
species | Selaginella moellendorffii |
transcript | EFJ11831 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGAAGAAGCTAGCAGATCAGGCTATTGAGGCAGACGTGTTCAAAGAAGAG ATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATGEST: gi|169106191|gb|FE507957.1|FE507957
genomic: CGAAGAAGCTAGCAGATCAGGCTATTGAGGCAGACGTGTTCAAAGAAGAGgtcagttctg ... tcgattacagATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATG
EST: CGAAGAAGCTAGCAGATCAGGCTATTGAGGCAGACGTGTTCAAAGAAGAG ATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATGEST: gi|169031780|gb|FE440610.1|FE440610
genomic: CGAAGAAGCTAGCAGATCAGGCTATTGAGGCAGACGTGTTCAAAGAAGAGgtcagttctg ... tcgattacagATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATG
EST: CGAAGAAGCTAGCAGATCAGGCTATTGAGGCAGACGTGTTCAAAGAAGAG ATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATGEST: gi|169067313|gb|FE473898.1|FE473898
genomic: CGAAGAAGCTAGCAGATCAGGCTATTGAGGCAGACGTGTTCAAAGAAGAGgtcagttctg ... tcgattacagATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATG
EST: CGAAGAAGCTAGCAGATCAGGCTATTGAGGCAGACGTGTTCAAAGAAGAG ATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATG
genomic: CGAAGAAGCTAGCAGATCAGGCTATTGAGGCAGACGTGTTCAAAGAAGAGgtcagttctg ... tcgattacagATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATG
gtcagttctgctatctttcgtcagattcttaaggtattggtcgattacagATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATGTATGAAAAGGAGTCAATAGAAAGCAG
attcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttctgctatctttcgtcagattcttaaggtattggtcgattacagATTCGCGTTCTCAAAGAAAGCGAGCAGGAGTTGAAGCTTATACTAGATATGTATGAAAAGGAGTCAATAGAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG