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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccgaagcgcatcttcttttgtgactttgtttatgttttcccacagACAATGGCCCTGGTAGGGGAAAGTGGGAGCGGGAAGTCAACTGTCATCGCTCTCTTGGAAAGATTCTACGATCCTGATAGCGGCGAGATACTCATCGACG

Basic information

species Selaginella moellendorffii
transcript EFJ10284
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ10284 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: Vv07s0005g02660.t01 (Vitis vinifera), 3'ss of exon 12
---------------------gtacccgaagcgcatcttcttttgtgactt-------tgtttatgttttcccacagACAATGGCCCTGGTAGGGGAAAGTGGGAGCGGGAAGTCAACTGTCATCGCTCTCTTGGAAAGATTCTACGATCCTGATAGCGGCGAGATACTCATCGACG
                        |   || |  ||  | ||   |||||        ||  | |  | |    |||||| ||||| ||||||| ||||||||||| || || ||||| ||||||||  |  || ||||||| || ||||| |||   ||  | ||     | || |
gtatactcccttggtctaatttagcttaaatcctattcttttcaatgactgaccaaggtgaatctcatatatttcagACAGTGGCCTTGGTAGGAGAAAGTGGGAGTGGAAAATCAACAGTCATCGCCTTGCTGCAAAGATTTTATGATCCGGATTCAGGTCATATCACACTGGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169097850|gb|FE498279.1|FE498279
EST:     CTGATGCGCAAGTGTTTCGTGACATGTGCTTCTCACTGGAAGCTGGAAAG                         ACAATGGCCCTGGTAGGGGAAAGTGGGAGCGGGAAGTCAACTGTCATCGCT
genomic: CTGATGCGCAAGTGTTTCGTGACATGTGCTTCTCACTGGAAGCTGGAAAGgtacccgaag ... tttcccacagACAATGGCCCTGGTAGGGGAAAGTGGGAGCGGGAAGTCAACTGTCATCGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacccgaagcgcatcttcttttgtgactttgtttatgttttcccacagACAATGGCCCTGGTAGGGGAAAGTGGGAGCGGGAAGTCAACTGTCATCGCTCTCTTGGAAAGATTCTACGATCCTGATAGCGGCGAGATACTCATCGACG
                                               tgttttccc  CT-rich tract
                                  tttgtttatgtttt  TA-rich tract