Sequence
atgc intronic sequence ATGC exonic sequencegtacgtctcccttttaaattttcggttttgaaatttcccgggctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAATCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ10214 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ10214 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 11
-------------gtacgtctcccttttaaatttt----cggtt-----------ttgaaatttcc--cgggctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAATCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
||| | ||||| | |||| || | | | | || || | ||| ||| || || | |||||| | | ||| ||||| ||||| || ||||||||||||| |||||| | || ||||||||||| |||||||| ||||| |||| || | || |
gtacggaacctctcagcgttttcctttatagttttactgcgatcagcagagctactagcagttaccagcaggcagttaactttgacg-gcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACG
upper sequence: EFJ10214 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: GRMZM2G412276_T01 (Zea mays), 3'ss of exon 10
--------------------------------------gtacgtctcccttttaaattttcggttttgaaatttcccgggctgttttctgtgttgc-------gcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAATCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
|| | || | | || | ||| | | | | | | || |||||| | ||||||||||| ||||||||||||||||| || || || ||| | || || || |||||||||||||| || || |||| || ||||||| |
gttgctcctttttttttaataatttggacacatttcttccacctgaccgacgcagagcttgatctcaataatgccattatatatataatatattatcctcgctgcagACTGTCGCGCTGGTCGGAGAGAGTGGAAGCGGCAAGTCGACGGTGATCGCCCTGCTCGAAAGGTTCTACGACCCGGAATCCGGCAAGATCTTCATCGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcccttttaaattttcggttttgaaatttcccgggctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAATCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
ttttctgt CT-rich tract
tttaaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgtctcccttttaaattttcggttttgaaatttcccgggctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAATCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG