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gtactttgttgtttttttcttaaagtttggcgatccgggctttgttcctccgatgatttacagGGTGGGAAATTCTTAACCGGTGGGGTGGGTACCACAACGTCACCTGGAGAAAACTACGTGACTCCCAGCATTGTGGAGATCTCTCACGATGCAGACGTCG
species | Selaginella moellendorffii |
transcript | EFJ38712 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCAGTCCAAGCAAGCTTTCGAGCAGGGATTAGAAGCAATCGCATCGCAG GGTGGGAAATTCTTAACTGGTGGGCTGGGTACCACAACGTCACCTGGAGAAEST: gi|169041798|gb|FE449330.1|FE449330
genomic: TCAGTCCAAGCAAGCTTTCGAGCAGGGATTAGAAGCAATCGCATCGCAGgtactttgtt ... tgatttacagGGTGGGAAATTCTTAACCGGTGGGGTGGGTACCACAACGTCACCTGGAGAA
EST: CTCAGTCCAAGCAAGCTTTCGAGCAGGGATTAGAAGCAATCGCATCGCAG GGTGGGAAATTCTTAACTGGTGGGCTGGGTACCACAACGTCACCTGGAGAAEST: gi|169104784|gb|FE509006.1|FE509006
genomic: CTCAGTCCAAGCAAGCTTTCGAGCAGGGATTAGAAGCAATCGCATCGCAGgtactttgtt ... tgatttacagGGTGGGAAATTCTTAACCGGTGGGGTGGGTACCACAACGTCACCTGGAGAA
EST: CTCAGTCCAAGCAAGCTTTCGAGCAGGGATTAGAAGCAATCGCATCGCAG GGTGGGAAATTCTTAACTGGTGGGCTGGGTACCACAACGTCACCTGGAGAA
genomic: CTCAGTCCAAGCAAGCTTTCGAGCAGGGATTAGAAGCAATCGCATCGCAGgtactttgtt ... tgatttacagGGTGGGAAATTCTTAACCGGTGGGGTGGGTACCACAACGTCACCTGGAGAA
ttgtttttttcttaaagtttggcgatccgggctttgttcctccgatgatttacagGGTGGGAAATTCTTAACCGGTGGGGTGGGTACCACAACGTCACCTGGAGAAAACTACGTGACTCCCAGCATTGTGGAGATCTCTCACGATGCAGACGTCG
tttttcttaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgttgtttttttcttaaagtttggcgatccgggctttgttcctccgatgatttacagGGTGGGAAATTCTTAACCGGTGGGGTGGGTACCACAACGTCACCTGGAGAAAACTACGTGACTCCCAGCATTGTGGAGATCTCTCACGATGCAGACGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC