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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatctcaatcaccactcaactcaactctagcttctcactttcgtttcctcctctggatttagCCTCGTCGAAAATCAACGAACCCGTTTGATCTACCCGAGGACACCAGTCTCCCG

Basic information

species Selaginella moellendorffii
transcript EFJ33278
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169110620|gb|FE513133.1|FE513133
EST:     ATAAGTTTTCCCCCATCACAATTTGCACCAGAAACCGTCGCTGCAGTG                         CCTCGTCGAAAATCAACGAACCCGTTTGATCTACCCGAGGACACCAGTCTC
genomic: ATAAGTTTTCCCCCATCACAATTTGCACCAGAAACCGTCGCTGCAGTGgtaagatctc ... ctggatttagCCTCGTCGAAAATCAACGAACCCGTTTGATCTACCCGAGGACACCAGTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaccactcaactcaactctagcttctcactttcgtttcctcctctggatttagCCTCGTCGAAAATCAACGAACCCGTTTGATCTACCCGAGGACACCAGTCTCCCG
                        ttctcac  putative branch site (score: 2)
                 ctctagcttctcactt  CT-rich tract
                                                 attta  TA-rich tract