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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcagccgaattctactgtcaatctaaaaatggggatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG

Basic information

species Selaginella moellendorffii
transcript EFJ32604
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32604 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: PP1S79_54V6.1 (Physcomitrella patens), 3'ss of exon 10
----------------------------------------------------gtaaatcagccgaattctactgtca-atctaaaaatggggatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG
                                                    ||  | | || | ||  |  | ||  |||      |||||  ||| |||||| |||| | |||||||||||| || || |||||||||||  | |||||||| | ||||||||||
tatttagctttcaattatgatggaagtagtcgatggaagatttgactgcggcgtggacctgc-gtataatgatatcttatcgctctttggggtggttacagGCAGCTACGCCAGAGTTCAAGGCGTACCAGGAACAAGTTCTGAGCAACTCTGCACGTTTTGCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169115018|gb|FE516383.1|FE516383
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169041586|gb|FE449547.1|FE449547
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169030970|gb|FE440331.1|FE440331
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169097027|gb|FE498418.1|FE498418
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169087280|gb|FE491693.1|FE491693
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169019624|gb|FE427973.1|FE427973
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169062066|gb|FE469151.1|FE469151
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169044082|gb|FE451668.1|FE451668
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169070247|gb|FE478068.1|FE478068
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169102881|gb|FE505246.1|FE505246
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169082302|gb|FE488045.1|FE488045
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169067937|gb|FE474782.1|FE474782
EST:     CTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: CTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169036058|gb|FE446764.1|FE446764
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169036891|gb|FE443851.1|FE443851
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169048578|gb|FE454447.1|FE454447
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTNAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACA-GTTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCT
EST: gi|169080653|gb|FE487174.1|FE487174
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169088705|gb|FE491539.1|FE491539
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169067649|gb|FE475833.1|FE475833
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169113159|gb|FE514405.1|FE514405
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169035181|gb|FE442572.1|FE442572
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169077298|gb|FE485600.1|FE485600
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169030299|gb|FE440024.1|FE440024
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169025096|gb|FE434696.1|FE434696
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169114785|gb|FE516046.1|FE516046
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169087153|gb|FE493100.1|FE493100
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169075644|gb|FE482030.1|FE482030
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169070246|gb|FE478067.1|FE478067
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169035575|gb|FE445345.1|FE445345
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169075798|gb|FE482795.1|FE482795
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169087446|gb|FE492223.1|FE492223
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169061497|gb|FE469596.1|FE469596
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169101299|gb|FE501987.1|FE501987
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169019269|gb|FE428182.1|FE428182
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169052582|gb|FE460921.1|FE460921
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169113402|gb|FE514729.1|FE514729
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169112011|gb|FE510689.1|FE510689
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169113160|gb|FE514406.1|FE514406
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169069491|gb|FE479535.1|FE479535
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169087332|gb|FE491745.1|FE491745
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169047242|gb|FE456491.1|FE456491
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169051133|gb|FE458680.1|FE458680
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169048577|gb|FE454446.1|FE454446
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169096115|gb|FE500275.1|FE500275
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169088634|gb|FE491520.1|FE491520
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169114933|gb|FE515882.1|FE515882
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169094799|gb|FE492950.1|FE492950
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169112012|gb|FE510690.1|FE510690
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169019686|gb|FE427489.1|FE427489
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169023492|gb|FE431403.1|FE431403
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169115017|gb|FE516382.1|FE516382
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169067635|gb|FE475832.1|FE475832
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
EST: gi|169044083|gb|FE451669.1|FE451669
EST:     GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAG                         GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT
genomic: GTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 47

ATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTTCAAGGTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTAAACAGgtaaatcagc ... gatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatcagccgaattctactgtcaatctaaaaatggggatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG
                                atctaaa  putative branch site (score: 47)
                                      aatctaaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatcagccgaattctactgtcaatctaaaaatggggatgtttcagGCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC