1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttgctgtattctctttttgcttgcaaagccctcttgatgattttggaaacttggcagCTAGGACTTGGCGACACGGGCGACCGTGATACTCCTCATGAAGTTCCGCTCGAGCACCGGGCAGTAAACGTAGCGTGTGGGTGGTGGCATACTCTCGCTC
species | Selaginella moellendorffii |
transcript | EFJ32311 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGGGAAGGTTTTTTGCTGGGGATGGAACAAGTATGGCCAG CTAGGACTTGGCGACACGGGCGACCGTGATACTCCTCATGAAGTTCCGCTCEST: gi|169088319|gb|FE492037.1|FE492037
genomic: AAAAGGGGAAGGTTTTTTGCTGGGGATGGAACAAGTATGGCCAGgtaagttgct ... aacttggcagCTAGGACTTGGCGACACGGGCGACCGTGATACTCCTCATGAAGTTCCGCTC
EST: AAAAGGGGAAGGTTTTTTGCTGGGGATGGAACAAGTATGGCCAG CTAGGACTTGGCGACACGGGCGACCGTGATACTCCTCATGAAGTTCCGCTC
genomic: AAAAGGGGAAGGTTTTTTGCTGGGGATGGAACAAGTATGGCCAGgtaagttgct ... aacttggcagCTAGGACTTGGCGACACGGGCGACCGTGATACTCCTCATGAAGTTCCGCTC
gctgtattctctttttgcttgcaaagccctcttgatgattttggaaacttggcagCTAGGACTTGGCGACACGGGCGACCGTGATACTCCTCATGAAGTTCCGCTCGAGCACCGGGCAGTAAACGTAGCGTGTGGGTGGTGGCATACTCTCGCTC
tcttgat putative branch site (score: 382)
atgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgctgtattctctttttgcttgcaaagccctcttgatgattttggaaacttggcagCTAGGACTTGGCGACACGGGCGACCGTGATACTCCTCATGAAGTTCCGCTCGAGCACCGGGCAGTAAACGTAGCGTGTGGGTGGTGGCATACTCTCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG