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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtgtgagctccgttaagatttgtgtattaacgtctattgatgcagACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCACTAAACGATCTTTTTCAATTATGTCAAAGCAGGAGGGACGCTTTTGCCT

Basic information

species Selaginella moellendorffii
transcript EFJ30678
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169097707|gb|FE499293.1|FE499293
EST:     TCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATG                         ACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCA
genomic: TCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtg ... attgatgcagACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCA
EST: gi|169078595|gb|FE487027.1|FE487027
EST:     TCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATG                         ACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCA
genomic: TCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtg ... attgatgcagACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaggtgtgagctccgttaagatttgtgtattaacgtctattgatgcagACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCACTAAACGATCTTTTTCAATTATGTCAAAGCAGGAGGGACGCTTTTGCCT
                               ttaagattt  TA-rich tract