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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatggtttatgacactagcgttttttcttttttatagattacaactagCTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTATCTGGGTTGAACTGCGGGATCTTCATATTGCTGAGGCAAG

Basic information

species Selaginella moellendorffii
transcript EFJ29221
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169113298|gb|FE515249.1|FE515249
EST:     CATACGAG--A--T-TAC-AACTAG                         CTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
genomic: CATACGAGGTAGATGTACCAA--A-gttcatggtt ... ttacaactagCTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
EST: gi|169113298|gb|FE515249.1|FE515249
EST:     CATACGAG--A--T-TAC-AACTAG                         CTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
genomic: CATACGAGGTAGATGTACCAA--A-gttcatggtt ... ttacaactagCTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
EST: gi|169078646|gb|FE487078.1|FE487078
EST:     CATAC---G-AGAT-TA-CAACTAG                         CTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
genomic: CATACGAGGTAGATGTACCAA--A-gttcatggtt ... ttacaactagCTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
EST: gi|169078646|gb|FE487078.1|FE487078
EST:     CATAC---G-AGAT-TA-CAACTAG                         CTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
genomic: CATACGAGGTAGATGTACCAA--A-gttcatggtt ... ttacaactagCTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
EST: gi|169116012|gb|FE517375.1|FE517375
EST:     CATACGAG--A--T-TAC-AACTAG                         CTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
genomic: CATACGAGGTAGATGTACCAA--A-gttcatggtt ... ttacaactagCTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
EST: gi|169116012|gb|FE517375.1|FE517375
EST:     CATACGAG--A--T-TAC-AACTAG                         CTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA
genomic: CATACGAGGTAGATGTACCAA--A-gttcatggtt ... ttacaactagCTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcatggtttatgacactagcgttttttcttttttatagattacaactagCTCTGGTAAAAGAGAACAGAAGGAAGTTCTCCTCGAAGAACATGACCCTATCTGGGTTGAACTGCGGGATCTTCATATTGCTGAGGCAAG
                                  ttttttcttttttata  TA-rich tract