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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccacgttgcttatcctaagccttttttgtgttttcaacagGTTCTTTTAAGTCAATCTCATCGTTTTCGGGCTTTGGTACTTTTAGGAAGGTTCTTGGATATGGGGGCATGGGCTGTGAACCTG

Basic information

species Selaginella moellendorffii
transcript EFJ28980
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ28980 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 10
-------------------------------------------------gtccacgttgcttatcctaagcctt---------ttttgtgttttcaacagGTTCTTTTAAGTCAATCTCATCGTTTTCGGGCTTTGGTACTTTTAGGAAGGTTCTTGGATATGGGGGCATGGGCTGTGAACCTG
                                                 ||    | |  || |   | || ||           ||||   |     ||||| |    |||||||  ||||| ||||||||||| |||||  | ||||||||| | ||||||||| ||||||||||  | |||
ttttcctattttcactatatgtatatttatttatgggaaaattgtttcagttgttgatattttttgcatgcattgataagtagcattgttcctattttagGTTTTACATAGTCAATGCCATCGGTTTCGGGCTTTAGTACTCCTTGGAAGGTTCCTTGATATGGGGCCATGGGCTGTAGATCTG

upper sequence: EFJ28980 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 10
-------------------------------------------------gtccacgttgcttatcctaagcctt---------ttttgtgttttcaacagGTTCTTTTAAGTCAATCTCATCGTTTTCGGGCTTTGGTACTTTTAGGAAGGTTCTTGGATATGGGGGCATGGGCTGTGAACCTG
                                                 ||    | |  || |   | || ||           ||||   |     ||||| |  | |||||||  ||||| ||||||||||| |||||  | ||||||||| | ||||||||| ||||||| ||  | |||
tttcacaatatgcatatttatatattggaaaattgtttgtcagacatcagttgttgatattttttgcatgcattgataagtagcattgttcctattttagGTTTTACTTAGTCAATGCCATCGGTTTCGGGCTTTAGTACTCCTTGGAAGGTTCCTTGATATGGGGCCATGGGCAGTAGATCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccacgttgcttatcctaagccttttttgtgttttcaacagGTTCTTTTAAGTCAATCTCATCGTTTTCGGGCTTTGGTACTTTTAGGAAGGTTCTTGGATATGGGGGCATGGGCTGTGAACCTG
                                              ccttttttgtgttttc  CT-rich tract
                                    ttttttgt  TA-rich tract