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gtgaggacagagcattgtttttgaccgattttgatactgttctatccattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCGCGATAAAAACACTAATCACTACCGCCATTGGCAAGAAAGTTGGCTTGT
species | Selaginella moellendorffii |
transcript | EFJ25893 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAG CTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCEST: gi|169047127|gb|FE457208.1|FE457208
genomic: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAGgtgaggacag ... cattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
EST: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAG CTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCEST: gi|169040292|gb|FE448370.1|FE448370
genomic: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAGgtgaggacag ... cattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
EST: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAG CTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCEST: gi|169052239|gb|FE463295.1|FE463295
genomic: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAGgtgaggacag ... cattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
EST: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAG CTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCEST: gi|169029732|gb|FE437403.1|FE437403
genomic: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAGgtgaggacag ... cattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
EST: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAG CTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
genomic: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAGgtgaggacag ... cattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
tgaggacagagcattgtttttgaccgattttgatactgttctatccattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCGCGATAAAAACACTAATCACTACCGCCATTGGCAAGAAAGTTGGCTTGT
ttctatcc CT-rich tract
attgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggacagagcattgtttttgaccgattttgatactgttctatccattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCGCGATAAAAACACTAATCACTACCGCCATTGGCAAGAAAGTTGGCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA