1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaatgcctttggagttggaacttcgcagttaaacacttactcatacaaaaagaaaactcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG
species | Selaginella moellendorffii |
transcript | EFJ25399 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAG CCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGEST: gi|169077503|gb|FE485948.1|FE485948
genomic: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAGgtaatgcctt ... tcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCG
EST: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAG CCACCAAAGTTCAGCTTTTACGATGCTTCCCAATCCEST: gi|169040693|gb|FE447328.1|FE447328
genomic: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAGgtaatgcctt ... tcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCC-AATCC
EST: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAG CCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGEST: gi|169112863|gb|FE514615.1|FE514615
genomic: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAGgtaatgcctt ... tcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCG
EST: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAG CCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGEST: gi|169071156|gb|FE478353.1|FE478353
genomic: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAGgtaatgcctt ... tcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCG
EST: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAG CCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGEST: gi|169077502|gb|FE485947.1|FE485947
genomic: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAGgtaatgcctt ... tcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCG
EST: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAG CCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGEST: gi|169087298|gb|FE491711.1|FE491711
genomic: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAGgtaatgcctt ... tcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCG
EST: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAG CCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCG
genomic: TTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAGgtaatgcctt ... tcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCG
agttggaacttcgcagttaaacacttactcatacaaaaagaaaactcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG
cacttac putative branch site (score: 37)
ctcttttgc putative PPT
atacaaaaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcctttggagttggaacttcgcagttaaacacttactcatacaaaaagaaaactcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA