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gtaactactggtgttgtttgaagagcgtaagctgatccagtgaggatgaagGCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAACCTATATCTCGAG
species | Selaginella moellendorffii |
transcript | EFJ24868 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCGCTGAGATACAATGCAGTACCGGCGGAAAAACTCCTTTCTTACTCGAG GCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAACEST: gi|169114156|gb|FE516835.1|FE516835
genomic: CCGCTGAGATACAATGCAGTACCGGCGGAAAAACTCCTTTCTTACTCGAGgtaactactg ... gaggatgaagGCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAAC
EST: CCGCTGAGATACAATGCAGTACCGGCGGAAAAACTCCTTTCTTACTCGAG GCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAACEST: gi|169020470|gb|FE431717.1|FE431717
genomic: CCGCTGAGATACAATGCAGTACCGGCGGAAAAACTCCTTTCTTACTCGAGgtaactactg ... gaggatgaagGCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAAC
EST: CCGCTGAGATACAATGCAGTACCGGCGGAAAAACTCCTTTCTTACTCGAG GCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAACEST: gi|169097119|gb|FE500083.1|FE500083
genomic: CCGCTGAGATACAATGCAGTACCGGCGGAAAAACTCCTTTCTTACTCGAGgtaactactg ... gaggatgaagGCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAAC
EST: CCGCTGAGATACAATGCAGTACCGGCGGAAAAACTCCTTTCTTACTCGAG GCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAAC
genomic: CCGCTGAGATACAATGCAGTACCGGCGGAAAAACTCCTTTCTTACTCGAGgtaactactg ... gaggatgaagGCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAAC
gtaactactggtgttgtttgaagagcgtaagctgatccagtgaggatgaagGCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAACCTATATCTCGAG
agctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactactggtgttgtttgaagagcgtaagctgatccagtgaggatgaagGCGCTTGCGATTCTTTACCTTTCTCAGAGGCAGCTTGAAAACGTGCTGAACCTATATCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT