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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatgtgtaatttgtaatggactctgaccttttctctttgacagGGCGATGTTTTGTTAAGTTTTGATGGTGTACCTATAGCTAACGAAGGAACAGTTTCTTTCCGGACAGGGGAACGAATCGATTTTGAGTTTCTTGTCACTC

Basic information

species Selaginella moellendorffii
transcript EFJ24627
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169064830|gb|FE476137.1|FE476137
EST:     TTATTCGAAGAGTTGAGCCACTTGCCCCCGTTGCCAGCGCCGTGAAGGCT                         GGCGATGTTTTGTTAAGTTTTGATGGTGTACCTATAGCTAACGAAGGAACA
genomic: TTATTCGAAGAGTTGAGCCACTTGCCCCCGTTGCCAGCGCCGTGAAGGCTgtaagtgatg ... tctttgacagGGCGATGTTTTGTTAAGTTTTGATGGTGTACCTATAGCTAACGAAGGAACA
EST: gi|169097836|gb|FE498265.1|FE498265
EST:     CCCCCGTTGCCAGCGTCGTGAAGGCT                         GGCGATGTTTTGTTAAGTTTTGATGGTGTACCTATAGCTAACGAAGGAACA
genomic: CCCCCGTTGCCAGCGCCGTGAAGGCTgtaagtgatg ... tctttgacagGGCGATGTTTTGTTAAGTTTTGATGGTGTACCTATAGCTAACGAAGGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtgatgtgtaatttgtaatggactctgaccttttctctttgacagGGCGATGTTTTGTTAAGTTTTGATGGTGTACCTATAGCTAACGAAGGAACAGTTTCTTTCCGGACAGGGGAACGAATCGATTTTGAGTTTCTTGTCACTC
                                ctctgac  putative branch site (score: 3)
                                ctctgaccttttctct  CT-rich tract
                  taatttgtaat  TA-rich tract