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gtaagttcgtttatcttgtttttcttctatgatggtgatgttcttttacagAAACAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGGAAGAGGTCAATGGCGGAG
species | Selaginella moellendorffii |
transcript | EFJ23984 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGTTCCTCGGGGTGCAAAAGAGCGTACGCAAGGCGCTAAACAGAAA AAGCAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGGEST: gi|169028151|gb|FE434002.1|FE434002
genomic: ATTTTGTTCCTCGGGGTGCAAAAGAGCGTACGCAAGGCGCTAAACAGAAAgtaagttcgt ... tcttttacagAAACAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGG
EST: ATTTTGTTCCTCGGGGTGCAAAAGAGCGTACGCAAGGCGCTAAACAGAAA AAGCAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGGEST: gi|169028150|gb|FE434001.1|FE434001
genomic: ATTTTGTTCCTCGGGGTGCAAAAGAGCGTACGCAAGGCGCTAAACAGAAAgtaagttcgt ... tcttttacagAAACAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGG
EST: ATTTTGTTCCTCGGGGTGCAAAAGAGCGTACGCAAGGCGCTAAACAGAAA AAGCAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGG
genomic: ATTTTGTTCCTCGGGGTGCAAAAGAGCGTACGCAAGGCGCTAAACAGAAAgtaagttcgt ... tcttttacagAAACAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGG
gtaagttcgtttatcttgtttttcttctatgatggtgatgttcttttacagAAACAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGGAAGAGGTCAATGGCGGAG
tgttctttt CT-rich tract
tttatcttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcgtttatcttgtttttcttctatgatggtgatgttcttttacagAAACAACACATGTCCGTGGCAGATAAGATGCGAACGCAGCAAATGAACCGGAAGAGGTCAATGGCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG