1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtagacatttcctgcttctatcttgtttaatctgtgagcgttttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTCGCACCGTTGCATCGTTTTGTGCGGAGAAGAAGATGCTGGAACTGTACA
species | Selaginella moellendorffii |
transcript | EFJ21083 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAG ACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTEST: gi|169102241|gb|FE503631.1|FE503631
genomic: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAGgtagacattt ... tttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATT
EST: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAG ACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTEST: gi|169093495|gb|FE496556.1|FE496556
genomic: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAGgtagacattt ... tttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATT
EST: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAG ACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTEST: gi|169070586|gb|FE479863.1|FE479863
genomic: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAGgtagacattt ... tttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATT
EST: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAG ACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTEST: gi|70671149|gb|DN839726.1|DN839726
genomic: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAGgtagacattt ... tttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATT
EST: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAG ACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTEST: gi|169038939|gb|FE449656.1|FE449656
genomic: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAGgtagacattt ... tttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATT
EST: CCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAG ACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTEST: gi|169099202|gb|FE502053.1|FE502053
genomic: CCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAGgtagacattt ... tttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATT
EST: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAG ACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATT
genomic: TCGGCCTTCTCCAAGTCAGGTTGATGACGGGCTTTAGCGCTGACGCCAAGgtagacattt ... tttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATT
gtagacatttcctgcttctatcttgtttaatctgtgagcgttttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTCGCACCGTTGCATCGTTTTGTGCGGAGAAGAAGATGCTGGAACTGTACA
gtttaat putative branch site (score: 11)
cgttttctttt putative PPT
ttttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagacatttcctgcttctatcttgtttaatctgtgagcgttttcttttagACCACGTACCAAGAAGCGAGCCGAATTGCAACGAGCGCAGTGAGCAACATTCGCACCGTTGCATCGTTTTGTGCGGAGAAGAAGATGCTGGAACTGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA