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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatatcgtttaagagcctcttttcctgatttagtagcaaacagGTTAGCAAAATGGGAGGAGAGATAAAGGTCGTGAAGAAGGAAGAGCCAGGAACTTTGATGCGGTTCTATCTTATGTACGACTCTCCATTCGAAGTATCCA

Basic information

species Selaginella moellendorffii
transcript EFJ20175
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20175 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: PP1S41_302V6.1 (Physcomitrella patens), 3'ss of exon 11
------------------------------------------------------------------------gtttgtatatcgtttaa---gagcctcttttcctgatttagt---agcaa--acagGTTAGCAAAATGGGAGGAGAGATAAAGGTCGTGAAGAAGGAAGAGCCAGGAACTTTGATGCGGTTCTATCTTATGTACGACTCTCCATTCGA-AGTATCCA
                                                                          || |||    || ||   ||   ||       || | ||    |||     |||||||| |||||||||||||| |||||  | ||||||||||||| ||| || ||  |  | || || || ||| |||   ||   ||  |||| ||    | 
gtaagtgattcatttttccttggactatgttgttaaaatttgcaaggcgtctctttcgattaaactgcgaatagttttatcatattcaagctgatagtccacgtaagactgagcccaagcggttgcagGTTAGGAAAATGGGAGGAGACATAAAAATTGTGAAGAAGGAAGGGCCTGGGACGCTTCTTCGCTTTTACCTTTTGTTTAACCAACCGGTCGACAGCGAAC-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtatatcgtttaagagcctcttttcctgatttagtagcaaacagGTTAGCAAAATGGGAGGAGAGATAAAGGTCGTGAAGAAGGAAGAGCCAGGAACTTTGATGCGGTTCTATCTTATGTACGACTCTCCATTCGAAGTATCCA
                                  tcctgat  putative branch site (score: 3)
               tttgtatat  TA-rich tract