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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcatgactggatgggaagatattagtgctttactggacaagctcaagcaggaccctttgcttggtgactcgagaaaaattctccttctgggatgccacggttcaatggccacagcagaacaggctggtcttgcttaattgcttggtggtatttcgatgttcgtgtctaaatgtttctttttcttttctgcagAAACTTATTTTCGAACATCCTCCTCCTGGTGTACGAAAGATTGTGCTGGCAACTAATATGGCTGAAACGAGTATCACTATCAATGACGTAGTGTTTGTGG

Basic information

species Selaginella moellendorffii
transcript EFJ19043
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ19043 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 3'ss of exon 4
gttttcatgactggatgggaagatattagtgctttactggacaagctcaagcaggaccctttgcttggtgactcgagaaaaattctccttctgggatgccacggt-tcaatggccaca-gcagaacaggctggtcttgcttaattgcttggtggtatttcgatgttcgtgtctaaatgtttctttttcttttct--gcagAAACTTATTTTCGAACATCCTCCTCCTGGTGTACGAAAGATTGTGCTGGCAACTAATATGGCTGAAACGAGTATCACTATCAATGACGTAGTGTTTGTGG
                                                                                                   || |   |     |||| |  |||||    |     |    |   ||  |  |  |||  |  |  || | | |  || || ||   ||||| ||  ||||||||| || || ||    |||   ||||||||| | || ||||| || ||||| ||| |||||||||| ||||| ||||||||||| ||||| |||||||
---------------------------------------------------------------------------------------------------caggtcatttgcagccatatacagaaagcaccaaa-tgatatctgtgtcttctcttataccatttatcatatattgatattactgcctctttgctgtgcagAAACTAATATTTGATAGACCTGAGCCTGGTGTAAGGAAAATTGTTCTTGCAACCAATTTGGCTGAAACAAGTATTACTATCAATGATGTAGTTTTTGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttggtggtatttcgatgttcgtgtctaaatgtttctttttcttttctgcagAAACTTATTTTCGAACATCCTCCTCCTGGTGTACGAAAGATTGTGCTGGCAACTAATATGGCTGAAACGAGTATCACTATCAATGACGTAGTGTTTGTGG
                          gtctaaa  putative branch site (score: 3)
                                 tgtttctttttctttt  CT-rich tract
                             taaatgtttcttttt  TA-rich tract