1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatacactgcaatctcaatctacgtaagaatcctactaataactatggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGGGAGGCAGCACGCAACGTTGTAGGTGCTACAATTTAGAAGGGAAGGAAAC
species | Selaginella moellendorffii |
transcript | EFJ18540 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGG GAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGEST: gi|169105291|gb|FE507628.1|FE507628
genomic: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGGgtaatacact ... ggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAG
EST: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGG GAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGTGGEST: gi|169102152|gb|FE505778.1|FE505778
genomic: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGGgtaatacact ... ggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGG
EST: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGG GAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGGEST: gi|169105683|gb|FE508449.1|FE508449
genomic: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGGgtaatacact ... ggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGG
EST: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGG GAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGEST: gi|169040327|gb|FE450251.1|FE450251
genomic: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGGgtaatacact ... ggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTG
EST: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGG GAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGGEST: gi|169049666|gb|FE457758.1|FE457758
genomic: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGGgtaatacact ... ggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGG
EST: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGG GAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGGEST: gi|169051997|gb|FE460336.1|FE460336
genomic: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGGgtaatacact ... ggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGG
EST: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGG GAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGG
genomic: GCTTTGGCCTTTTTGTCCTGGAATCTCTCCTCAGCCTATGGGTTCTCCGGgtaatacact ... ggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGG
atacactgcaatctcaatctacgtaagaatcctactaataactatggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGGGAGGCAGCACGCAACGTTGTAGGTGCTACAATTTAGAAGGGAAGGAAAC
taataac putative branch site (score: 50)
taataactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacactgcaatctcaatctacgtaagaatcctactaataactatggcttggcagGAGGTGTATGCGTACTTCCGGGGTACAGGCAAAGCGGCACAACTGAAGAGGGAGGCAGCACGCAACGTTGTAGGTGCTACAATTTAGAAGGGAAGGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA