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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcgaattattcactcgtttgtcttctacatgctttgcgttcatgcagCTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTTCAGTCAATTCTTGACAACGTTTTTATACCGTTGTTCGAGGTCACTGTGA

Basic information

species Selaginella moellendorffii
transcript EFJ17267
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169074137|gb|FE482382.1|FE482382
EST:     GGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAG                         CTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTT
genomic: GGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgtttgcgaat ... gttcatgcagCTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTT
EST: gi|169066741|gb|FE473300.1|FE473300
EST:     GGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAG                         CTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTT
genomic: GGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgtttgcgaat ... gttcatgcagCTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgcgaattattcactcgtttgtcttctacatgctttgcgttcatgcagCTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTTCAGTCAATTCTTGACAACGTTTTTATACCGTTGTTCGAGGTCACTGTGA
                  aattattca  TA-rich tract