1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaagttcttcgcaagctcaaagtttgcaaaactcactcaaagcttgtggaaacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGATGGCGCACACTTGGCTGGAGTCGCAGATTGGATCGTCGAGCAGCTCCTC
species | Selaginella moellendorffii |
transcript | EFJ15933 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169055059|gb|FE461934.1|FE461934
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: CACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169088352|gb|FE492070.1|FE492070
genomic: CACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169060188|gb|FE468174.1|FE468174
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169023566|gb|FE430554.1|FE430554
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169027721|gb|FE434858.1|FE434858
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169020581|gb|FE428786.1|FE428786
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: GATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169055058|gb|FE461933.1|FE461933
genomic: GATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: CACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169088783|gb|FE492813.1|FE492813
genomic: CACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGAEST: gi|169094263|gb|FE495541.1|FE495541
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
tcttcgcaagctcaaagtttgcaaaactcactcaaagcttgtggaaacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGATGGCGCACACTTGGCTGGAGTCGCAGATTGGATCGTCGAGCAGCTCCTC
aactcac putative branch site (score: 7)
aaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagttcttcgcaagctcaaagtttgcaaaactcactcaaagcttgtggaaacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGATGGCGCACACTTGGCTGGAGTCGCAGATTGGATCGTCGAGCAGCTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC