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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctccttctgggatgccacggttcaatggccacagcagaacaggctggtcttgcttaatttcttggtggtatttcgatgttcgtgtctaaatgtttctttttctttttctgcagAAACTTATTTTCGAACATCCTCCTCCTGGTGTACGAAAGATTGTGCTGGCAACTAATATGGCTGAAACGAGTATCACTATCAATGACGTAGTGTTTGTGG

Basic information

species Selaginella moellendorffii
transcript EFJ13473
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13473 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 3'ss of exon 4
gttctccttctgggatgccacggt-tcaatggccaca-gcagaacaggctggtcttgcttaatttcttggtggtatttcgatgttcgtgtctaaatgtttctttttcttt-ttctgcagAAACTTATTTTCGAACATCCTCCTCCTGGTGTACGAAAGATTGTGCTGGCAACTAATATGGCTGAAACGAGTATCACTATCAATGACGTAGTGTTTGTGG
                  || |   |     |||| |  |||||    |         |   | ||||  |  |||  |  |  || | | |  || || ||   |||||  | |||||||||| || || ||    |||   ||||||||| | || ||||| || ||||| ||| |||||||||| ||||| ||||||||||| ||||| |||||||
------------------caggtcatttgcagccatatacagaaagcaccaaatgatatctgtgtcttc-tcttataccatttatcatatattgatattactgcctctttgctgtgcagAAACTAATATTTGATAGACCTGAGCCTGGTGTAAGGAAAATTGTTCTTGCAACCAATTTGGCTGAAACAAGTATTACTATCAATGATGTAGTTTTTGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttggtggtatttcgatgttcgtgtctaaatgtttctttttctttttctgcagAAACTTATTTTCGAACATCCTCCTCCTGGTGTACGAAAGATTGTGCTGGCAACTAATATGGCTGAAACGAGTATCACTATCAATGACGTAGTGTTTGTGG
                         gtctaaa  putative branch site (score: 3)
                                tgtttctttttctttt  CT-rich tract
                            taaatgtttctttttc  TA-rich tract