Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtttggttttcctcttcttcagtcttttattctgagcttaaaaacagAAACTGGGAGACATCATGGAAATGGCATTTGCCGGTAGATACGTGCTGCTTCTCATGTCTCTTTTCTCAATCTATACGGGCTTCATCTACAACGAATTTT

Basic information

species Selaginella moellendorffii
transcript EFJ12515
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12515 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: GLYMA06G03040.1 (Glycine max), 3'ss of exon 11
--------------------------------------------gttcgtttggttttcctctt--cttcagtcttttattctgagcttaaaaac---agAAACTGGGAGACATCATGGAAATGGCATTTGCCGGTAGATACGTGCTGCTTCTCATGTCTCTTTTCTCAATCTATACGGGCTTCATCTACAACGAATTTT
                                             | | |||  ||||  |       ||||| || | |  ||   |||| |||   ||||||| |||||||| |||||||||||||||| |||  | ||  |  |  | || ||| | || |||||||||||||| || || || || ||||| ||||
gtacttaacacatgatcatggggtatttgtattgaatctgaatgttcccttttatttttatgccagtgtcagttttgtttaatgttgttaataacggcagAAACTTGGAGACATAATGGAAATGGCATTTGGCGGACGCTATATCATTATGCTGATGGCCCTCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgtttggttttcctcttcttcagtcttttattctgagcttaaaaacagAAACTGGGAGACATCATGGAAATGGCATTTGCCGGTAGATACGTGCTGCTTCTCATGTCTCTTTTCTCAATCTATACGGGCTTCATCTACAACGAATTTT
                                     tcttttatt  TA-rich tract