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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggacagagcattgtttttgaccgatttttatactgttctatccattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCGCGATAAAAACACTAATCACTACCGCCATTGGCAATAAAGTTGGCTTGT

Basic information

species Selaginella moellendorffii
transcript EFJ10924
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169023428|gb|FE431898.1|FE431898
EST:     TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAG                         CTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
genomic: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAGgtgaggacag ... cattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
EST: gi|169093395|gb|FE492699.1|FE492699
EST:     TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAG                         CTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACT
genomic: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAGgtgaggacag ... cattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACT
EST: gi|169080478|gb|FE488455.1|FE488455
EST:     TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAG                         CTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC
genomic: TATTGCTTGGACTGTTTTTTGTAACGACGGGCACATCGATCGATCTCCAGgtgaggacag ... cattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaggacagagcattgtttttgaccgatttttatactgttctatccattttgcagCTTTTAATTCGAGAGTGGCCAAATGTTTTAGCACTCCTAGGTGGCTTAATCGCGATAAAAACACTAATCACTACCGCCATTGGCAATAAAGTTGGCTTGT
                 ttttgac  putative branch site (score: 3)
                                      ttctatcc  putative PPT
                          atttttatactgtt  TA-rich tract