1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagaaagaacgcttccccggaattttttttttaactcactctttttttaccagAGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGGTCAGGCTTTCACAGGGAAAGAGCGG
species | Selaginella moellendorffii |
transcript | EFJ04554 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGAATTTTCATGTACCCAGCTGACAAAAAGAGCCCCTTTGGAAAATTACG AGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGGEST: gi|169060723|gb|FE469749.1|FE469749
genomic: GGAATTTTCATGTACCCAGCTGACAAAAAGAGCCCCTTTGGAAAATTACGgtgagaaaga ... tttttaccagAGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGG
EST: GGAATTTTCATGTACCCAGCTGACAAAAAGAGCCCCTTTGGAAAATTACG AGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGGEST: gi|169038024|gb|FE443632.1|FE443632
genomic: GGAATTTTCATGTACCCAGCTGACAAAAAGAGCCCCTTTGGAAAATTACGgtgagaaaga ... tttttaccagAGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGG
EST: GGAATTTTCATGTACCCAGCTGACAAAAAGAGCCCCTTTGGAAAATTACG AGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGG
genomic: GGAATTTTCATGTACCCAGCTGACAAAAAGAGCCCCTTTGGAAAATTACGgtgagaaaga ... tttttaccagAGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGG
gtgagaaagaacgcttccccggaattttttttttaactcactctttttttaccagAGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGGTCAGGCTTTCACAGGGAAAGAGCGG
aactcac putative branch site (score: 9)
ttttttttttaactca CT-rich tract
aattttttttttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaaagaacgcttccccggaattttttttttaactcactctttttttaccagAGTTCTCTATGAGGTGTTTCCAATGTCCTATCTCGTTGAGCAAGCCGGGGGTCAGGCTTTCACAGGGAAAGAGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG