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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcgtgattttcttcatcgtctgggcaggaaaatctcacaacttcgccgatttttcagGTGATTGCACAGAGAAGGCCCATTGTGCACAGGGTTTTGGATTATAGCGACGAGTTCTTCGCATTTCTAATGCTAATTCTCGAGGCGCACAACGTCCGGA

Basic information

species Selaginella moellendorffii
transcript EFJ38878
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056506|gb|FE464914.1|FE464914
EST:     CGCAGCAGCTCCCGGAGAGCTTGAGGGCGGCGCTAATGTATTCATTGGGG                         GTGATTGCACAGAGAAGGCCCATTGTGCACAGGGTTTTGGATTATAGCGAC
genomic: CGCAGCAGCTCCCGGAGAGCTTGAGAGCGGCGCTAATGTATTCATTGGGGgtaatcgtga ... gatttttcagGTGATTGCACAGAGAAGGCCCATTGTGCACAGGGTTTTGGATTATAGCGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgattttcttcatcgtctgggcaggaaaatctcacaacttcgccgatttttcagGTGATTGCACAGAGAAGGCCCATTGTGCACAGGGTTTTGGATTATAGCGACGAGTTCTTCGCATTTCTAATGCTAATTCTCGAGGCGCACAACGTCCGGA
                             atctcac  putative branch site (score: 3)
                                               tttttc  putative PPT
                                              atttttca  TA-rich tract