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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttctcattcttttcttacattgtaggaatttcgtttcgtttcgtttctccatgatcaagcgatcacaatttcatttgttttcatctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACCACGTCCAATGTTGTCAGTGGATGACCTTCGTGAGATTGATCTCTATGCT

Basic information

species Selaginella moellendorffii
transcript EFJ38867
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169094619|gb|FE494545.1|FE494545
EST:     ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAG                         CCCACTCGCAAGGGCCAAACGAACAGCGGAGATAATATGGGCTGCGAGACC
genomic: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAGgttcttctca ... atctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC
EST: gi|169023451|gb|FE431388.1|FE431388
EST:     ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAG                         TCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC
genomic: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAGgttcttctca ... atctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC
EST: gi|169046389|gb|FE457393.1|FE457393
EST:     ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAG                         TCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC
genomic: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAGgttcttctca ... atctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcgtttctccatgatcaagcgatcacaatttcatttgttttcatctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACCACGTCCAATGTTGTCAGTGGATGACCTTCGTGAGATTGATCTCTATGCT
                                    tttgttttcatcttt  CT-rich tract
 aatttcatttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcttctcattcttttcttacattgtaggaatttcgtttcgtttcgtttctccatgatcaagcgatcacaatttcatttgttttcatctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACCACGTCCAATGTTGTCAGTGGATGACCTTCGTGAGATTGATCTCTATGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA