1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcttctcattcttttcttacattgtaggaatttcgtttcgtttcgtttctccatgatcaagcgatcacaatttcatttgttttcatctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACCACGTCCAATGTTGTCAGTGGATGACCTTCGTGAGATTGATCTCTATGCT
species | Selaginella moellendorffii |
transcript | EFJ38867 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAG CCCACTCGCAAGGGCCAAACGAACAGCGGAGATAATATGGGCTGCGAGACCEST: gi|169023451|gb|FE431388.1|FE431388
genomic: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAGgttcttctca ... atctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC
EST: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAG TCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACCEST: gi|169046389|gb|FE457393.1|FE457393
genomic: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAGgttcttctca ... atctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC
EST: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAG TCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC
genomic: ACTTCCAGGCAGATGTTGATTGGGGACTCCTTTGATGCCTGCTTTCACAGgttcttctca ... atctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACC
gtttcgtttctccatgatcaagcgatcacaatttcatttgttttcatctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACCACGTCCAATGTTGTCAGTGGATGACCTTCGTGAGATTGATCTCTATGCT
tttgttttcatcttt CT-rich tract
aatttcatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttctcattcttttcttacattgtaggaatttcgtttcgtttcgtttctccatgatcaagcgatcacaatttcatttgttttcatctttgcagTCCACTCGCAAGGGCCAAACGAACGGCGGAGATAATATGGGCTGCGAGACCACGTCCAATGTTGTCAGTGGATGACCTTCGTGAGATTGATCTCTATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA