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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaaagccgctgactagatgttgactggctttgactatgtttgacttccatttttttcagCTGGACGACTGGGTGCTATGCCGAATTTACAAAAAG

Basic information

species Selaginella moellendorffii
transcript EFJ38403
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38403 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
----------------------------------------gtttgaaagccgctgactagatgttgactggctttgactatgtttgacttccatttttttcagCTGGACGACTGGGTGCTATGCCGAATTTACAAAAAG----------------------------------------------------------------
                                        | || |||   | ||   | ||| |  ||| |||  | | || | || |||   ||||| |||||||| ||||||||||| |||||||||||||| |||                                                                
ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatg-tgtgcacatgattgctgactt-aattttgat-gatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgctgactagatgttgactggctttgactatgtttgacttccatttttttcagCTGGACGACTGGGTGCTATGCCGAATTTACAAAAAG
                                       cttccatttttttc  CT-rich tract
                                            atttttttca  TA-rich tract