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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccatagaacttttttttttttttttttttttgatcctcttaacatcaagtgcccttcttttttccagCAAGTGAAGGGGCTTTTCTCAAAGAGCCGAAGATATCGTTCTTCCACCTCGGGCTGAGTCCTTATATTTGCGCAAGCACTGTTATACATGTAC

Basic information

species Selaginella moellendorffii
transcript EFJ37667
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169046188|gb|FE456360.1|FE456360
EST:     TAATCACAGGACAATGCCATCGAATTTTCTCGGCTCCACCGCTCTTACAG                         CAAGTGAAGGGGCTTTTCTCAAAGAGCCGAAGATATCGTTCTTCCACCTCG
genomic: TAATCACAGGACAATGCCATCGAATTTTCTCGGCTCCACCGCTCTTACAGgtaaggccat ... ttttttccagCAAGTGAAGGGGCTTTTCTCAAAGAGCCGAAGATATCGTTCTTCCACCTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttttttttttttgatcctcttaacatcaagtgcccttcttttttccagCAAGTGAAGGGGCTTTTCTCAAAGAGCCGAAGATATCGTTCTTCCACCTCGGGCTGAGTCCTTATATTTGCGCAAGCACTGTTATACATGTAC
                        tcttaac  putative branch site (score: 2)
                                     tgcccttcttttttcc  putative PPT
     ttttttttttttttga  TA-rich tract