1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtttttcgatcgattctttctcgcttcgctcttttctactcgcaaatgctggttcttcgctgatatttggccgttatttcgcttccagTTTGCTGCTTTGCCGCCTTCTG
species | Selaginella moellendorffii |
transcript | EFJ37190 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAACCTCTGGCACACCGATCTCACGCATTCCACTCTCAACGATTGTCCAT TTTGCTGCTTTGCCGCCTTCTGEST: gi|169109930|gb|FE511078.1|FE511078
genomic: CAACCTCTGGCACACCGATCTCACGCATTCCACTCTCAACGATTGTCCATgtaagttttt ... tcgcttccagTTTGCTGCTTTGCCGCCTTCTG
EST: ACGATTGTCCAT TTTGCTGCTTTGCCGCCTTCTGEST: gi|169048544|gb|FE454426.1|FE454426
genomic: ACGATTGTCCATgtaagttttt ... tcgcttccagTTTGCTGCTTTGCCGCCTTCTG
EST: CACGCATTCCACTCTCAACGATTGTCCAT TTTGCTGCTTTGCCGCCTTCTGATCTTCTCTACAG
genomic: CACGCATTCCACTCTCAACGATTGTCCATgtaagttttt ... tcgcttccagTTTGCTGCTTTGCCG----C----C-T-TCT---G
ttctactcgcaaatgctggttcttcgctgatatttggccgttatttcgcttccagTTTGCTGCTTTGCCGCCTTCTG
cgctgat putative branch site (score: 3)
tttcgcttcc putative PPT
tgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttcgatcgattctttctcgcttcgctcttttctactcgcaaatgctggttcttcgctgatatttggccgttatttcgcttccagTTTGCTGCTTTGCCGCCTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT