1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagattatggattgctggatggatttaagtctccttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAGGGAAGAAACGTGGTGCTCGAGAGCAAGTATGGATCTCCAAAGATTGTCA
species | Selaginella moellendorffii |
transcript | EFJ36935 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAG GCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAGEST: gi|169098668|gb|FE500232.1|FE500232
genomic: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtgagattat ... cttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAG
EST: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAG GCTGGTGCAAACAAAGTGGCCAATTTAGTGGGAGTTACTTTGGGTCCCAAGEST: gi|169028067|gb|FE435425.1|FE435425
genomic: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtgagattat ... cttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAG
EST: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAG GCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAGEST: gi|169111607|gb|FE513964.1|FE513964
genomic: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtgagattat ... cttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAG
EST: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAG GCTGGTGCAAACAAAGTGGCCAATTTAGTGGGAGTTACTTTGGGTCCCAAGEST: gi|169024241|gb|FE435219.1|FE435219
genomic: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtgagattat ... cttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAG
EST: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAG GCTGGTGCAAACAAAGTGGCCAATTTAGTGGGAGTTACTTTGGGTCCCAAGEST: gi|169021474|gb|FE428561.1|FE428561
genomic: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtgagattat ... cttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAG
EST: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAG GCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAGEST: gi|169077168|gb|FE486094.1|FE486094
genomic: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtgagattat ... cttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAG
EST: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAG GCTGGTGCAAACAAAGTGGCCAATTTAGTGGGAGTTACTTTGGGTCCCAAG
genomic: CGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtgagattat ... cttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAG
gtgagattatggattgctggatggatttaagtctccttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAGGGAAGAAACGTGGTGCTCGAGAGCAAGTATGGATCTCCAAAGATTGTCA
tctccttat CT-rich tract
ttataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattatggattgctggatggatttaagtctccttataatagGCTGGTGCGAACAAAGTGGCCGATTTAGTGGGAGTTACTTTGGGTCCCAAGGGAAGAAACGTGGTGCTCGAGAGCAAGTATGGATCTCCAAAGATTGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG