1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagcgattggattgctccagagatcgattggtgagatattttgttctaatcttcgtcgattccagTCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCAAGAAGCTCGATGACGAGACCGAGGAGCTCGCCC
species | Selaginella moellendorffii |
transcript | EFJ36890 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTGAACGAGGCGCGTCGCAGTGGCGGCCCGATCGAGACGATTAAGAAGT TCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCAEST: gi|169078932|gb|FE486584.1|FE486584
genomic: CGTGAACGAGGCGCGTCGCAGTGGCGGCCCGATCGAGACGATTAAGAAGTgtaagcgatt ... tcgattccagTCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCA
EST: CGTGAACGAGGCGCGTCGCAGTGGCGGCCCGATCGAGACGATTAAGAAGT TCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCAEST: gi|169077262|gb|FE485148.1|FE485148
genomic: CGTGAACGAGGCGCGTCGCAGTGGCGGCCCGATCGAGACGATTAAGAAGTgtaagcgatt ... tcgattccagTCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCA
EST: CGTGAACGAGGCGCGTCGCAGTGGCGGCCCGATCGAGACGATTAAGAAGT TCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCAEST: gi|169022560|gb|FE429444.1|FE429444
genomic: CGTGAACGAGGCGCGTCGCAGTGGCGGCCCGATCGAGACGATTAAGAAGTgtaagcgatt ... tcgattccagTCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCA
EST: CGTGAACGAGGCGCGTCGCAGTGGCGGCCCGATCGAGACGATTAAGAAGT TCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCA
genomic: CGTGAACGAGGCGCGTCGCAGTGGCGGCCCGATCGAGACGATTAAGAAGTgtaagcgatt ... tcgattccagTCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCA
attgctccagagatcgattggtgagatattttgttctaatcttcgtcgattccagTCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCAAGAAGCTCGATGACGAGACCGAGGAGCTCGCCC
ttctaat putative branch site (score: 91)
tcttcgtc CT-rich tract
atattttgttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgattggattgctccagagatcgattggtgagatattttgttctaatcttcgtcgattccagTCAATGCGGGGTCGAACAAGGCAGCGACAAGCACGCCGGGAATTAACACCAAGAAGCTCGATGACGAGACCGAGGAGCTCGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT