1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagaagaaaaccatcccgagttctcgaccaaaatcgcattttttcgcctcgccacgagtggatctggccctgccgagatccatcctgggatttgtctctcgagatgtcgaggctcacttcttttcatttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATCTCGGACGAGCTCATGCTGGATGGAAATCCTCGTCTCAATCTCGCCTCC
species | Selaginella moellendorffii |
transcript | EFJ36644 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169075461|gb|FE483095.1|FE483095
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169060617|gb|FE467355.1|FE467355
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169060384|gb|FE467915.1|FE467915
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169066370|gb|FE473046.1|FE473046
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169093055|gb|FE494166.1|FE494166
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169054363|gb|FE460808.1|FE460808
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169080213|gb|FE488385.1|FE488385
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169025802|gb|FE433101.1|FE433101
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATEST: gi|169025238|gb|FE432290.1|FE432290
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
catcctgggatttgtctctcgagatgtcgaggctcacttcttttcatttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATCTCGGACGAGCTCATGCTGGATGGAAATCCTCGTCTCAATCTCGCCTCC
ggctcac putative branch site (score: 53)
ctcacttcttttcatt CT-rich tract
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagaaaaccatcccgagttctcgaccaaaatcgcattttttcgcctcgccacgagtggatctggccctgccgagatccatcctgggatttgtctctcgagatgtcgaggctcacttcttttcatttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATCTCGGACGAGCTCATGCTGGATGGAAATCCTCGTCTCAATCTCGCCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA