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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcttttttcacttttcttcctttttttcttggtcttttggatctcaatcatattcgtagGTTGAGTGTACCATTCCAAAGGACGATGGCACTCTGCAGTCTTTCGTGGGTTTTAGAGTCCAACATGACAACTCGAGGGGTCCCATGAAGGGTGGCATTC

Basic information

species Selaginella moellendorffii
transcript EFJ36429
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ36429 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT5G07440.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------gtctcttttttcacttttc-------ttcctttttttcttggtcttttggatctcaatcatattcgtagGTTGAGTGTACCATTCCAAAGGACGATGGCACTCTGCAGTCTTTCGTGGGTTTTAGAGTCCAACATGACAACTCGAGGGGTCCCATGAAGGGTGGCATTC
                                 ||| || ||||  ||||        ||| | |   |||| || |      | | | |  |  |   ||||||||||||| ||||| || |||||||||||||||   || | | | || ||||| || |||||||||||  |  | || |||||||| ||||| ||  
gtttgacttttttttttccttttgaggttttactcttttgtttcgtttttggggaaaattcgtctcaatctttgtttggatttttttacttttgatttcagGTTGAGTGTACGATTCCTAAAGACGATGGCACTCTGGTTTCATACATCGGATTTAGGGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcacttttcttcctttttttcttggtcttttggatctcaatcatattcgtagGTTGAGTGTACCATTCCAAAGGACGATGGCACTCTGCAGTCTTTCGTGGGTTTTAGAGTCCAACATGACAACTCGAGGGGTCCCATGAAGGGTGGCATTC
                tttttttctt  TA-rich tract