1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatggatcgatttcccccctcttcttcctctctctgtcccctgtttatagggttcttgggatgtgtagATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGCGCCGCGATGGTGGACGCCAAGTACAAGGATTCGATCACCCACTTGGGCG
species | Selaginella moellendorffii |
transcript | EFJ36013 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGATGCTTTCCAGTCGCCATCGTGCCCAAATCCACGCTCTTCCAGAAG ATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGCEST: gi|169102851|gb|FE508635.1|FE508635
genomic: GGGGATGCTTTCCAGTCGCCATCGTGCCCAAATCCACGCTCTTCCAGAAGgtaatggatc ... ggatgtgtagATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGC
EST: GGGGATGCTTTCCAGTCGCCATCGTGCCCAAATCCACGCTCTTCCAGAAG ATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGCEST: gi|169054254|gb|FE463195.1|FE463195
genomic: GGGGATGCTTTCCAGTCGCCATCGTGCCCAAATCCACGCTCTTCCAGAAGgtaatggatc ... ggatgtgtagATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGC
EST: GGGGATGCATTCCAGTCGCCATCGTGCCCAAATCCACGCTCTTCCAGAAG ATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGC
genomic: GGGGATGCTTTCCAGTCGCCATCGTGCCCAAATCCACGCTCTTCCAGAAGgtaatggatc ... ggatgtgtagATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGC
cccccctcttcttcctctctctgtcccctgtttatagggttcttgggatgtgtagATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGCGCCGCGATGGTGGACGCCAAGTACAAGGATTCGATCACCCACTTGGGCG
tgtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggatcgatttcccccctcttcttcctctctctgtcccctgtttatagggttcttgggatgtgtagATTGGCGCGGAAGTGATCAGCACATTCATCCTCGTCTTCGCGGGATGTGGCGCCGCGATGGTGGACGCCAAGTACAAGGATTCGATCACCCACTTGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA