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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatctattcgatgcctagcccaccctctcgctgtggctaacgaagtttagcttggttttttggtctggattctcctcccagGTGTACCAGCTCTCAATTGGCGCTGCTTGTGGCCTCTCGTGGCCTTCGGACCGCATTATTGTGCAAATCCTGGACGATTCGACCGACCTCACCATCAAG

Basic information

species Selaginella moellendorffii
transcript EFJ35401
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ35401 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 1
-------------------------gtgatctattcgatgcctagcccaccctctcgctgtggctaacgaagtttagcttggttttttggtctggattctcctcccagGTGTACCAGCTCTCAATTGGCGCTGCTTGTGGCCTCTCGTGGCCTTCGGACCGCATTATTGTGCAAATCCTGGACGATTCGACCGACCTCACCATCAAG
                         ||| | || ||  |   |||   |   |   | |  |  |  ||   || |  ||  | | || || |      |     ||||| ||||||||||||||||| ||||| ||||| ||||| ||||| || || || || ||  | ||| ||||||||||||| ||||||| ||| ||||||
gtgctctctcttgcggtttccttctgtggtttactctgt-tttagtaaaattttctgtttagttt--cggttttgatttttttgtctttgtttcatacatgtcaacagGTTTACCAGCTCTCAATTGGAGCTGCATGTGGACTCTCATGGCCCTCCGATCGTATCATAATTCAAGTCCTGGACGATTCAACCGACCCCACAATCAAG

upper sequence: EFJ35401 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv13s0074g00500.t01 (Vitis vinifera), 3'ss of exon 1
-------gtgatctattcgatgcctagcccaccct----ctcgctgtggc-taacgaagtttagc----ttggttttttggtctggattctcctcccagGTGTACCAGCTCTCAATTGGCGCTGCTTGTGGCCTCTCGTGGCCTTCGGACCGCATTATTGTGCAAATCCTGGACGATTCGACCGACCTCACCATCAAG
        | || |  || |||   | |    |||     |   |||    | |||   | | ||     || |||| || | | | |||| |    |||| ||||||||||| ||||| ||||| |||||||| || |||||||| ||  | || ||  | ||| | ||||||||||| |||||||  ||||| |||
gtaccaaataatatcatc-atgatcatcaggtcctgaaattttttgtcatatcacgttctctcgcacatctgattttctgcttttgtttctgc----agGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgctgtggctaacgaagtttagcttggttttttggtctggattctcctcccagGTGTACCAGCTCTCAATTGGCGCTGCTTGTGGCCTCTCGTGGCCTTCGGACCGCATTATTGTGCAAATCCTGGACGATTCGACCGACCTCACCATCAAG
        ggctaac  putative branch site (score: 2)
                                           ttctcctccc  putative PPT
                             tttttt  TA-rich tract