1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggcaatctctcgccctctcgctccctctcccgagattttggtgaaaatctggtgatattatggtgggttgcttgcagGATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAGTCCAAGATCAATCACCTCAAGCTCGCTCACTTCGCGGTGATCGTGTCGC
species | Selaginella moellendorffii |
transcript | EFJ34882 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGGCATCAGCTCACGCTCAAGCTCGAGAAATTCTTCCAGCACCTCCGG GATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAGEST: gi|169100886|gb|FE501709.1|FE501709
genomic: TCTGGCATCAGCTCACGCTCAAGCTCGAGAAATTCTTCCAGCACCTCCGGgtaggcaatc ... ttgcttgcagGATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAG
EST: TCTGGCATCAGCTCACGCTCAAGCTCGAGAAATTCTTCCAGCACCTCCGG GATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAGEST: gi|169107352|gb|FE504152.1|FE504152
genomic: TCTGGCATCAGCTCACGCTCAAGCTCGAGAAATTCTTCCAGCACCTCCGGgtaggcaatc ... ttgcttgcagGATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAG
EST: TCTGGCATCAGCTCACGCTCAAGCTCGAGAAATTCTTCCAGCACCTCCGG GATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAGEST: gi|169074432|gb|FE480818.1|FE480818
genomic: TCTGGCATCAGCTCACGCTCAAGCTCGAGAAATTCTTCCAGCACCTCCGGgtaggcaatc ... ttgcttgcagGATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAG
EST: TCTGGCATCAGCTCACGCTCAAGCTCGAGAAATTCTTCCAGCACCTCCGG GATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAG
genomic: TCTGGCATCAGCTCACGCTCAAGCTCGAGAAATTCTTCCAGCACCTCCGGgtaggcaatc ... ttgcttgcagGATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAG
ccctctcccgagattttggtgaaaatctggtgatattatggtgggttgcttgcagGATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAGTCCAAGATCAATCACCTCAAGCTCGCTCACTTCGCGGTGATCGTGTCGC
tgatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcaatctctcgccctctcgctccctctcccgagattttggtgaaaatctggtgatattatggtgggttgcttgcagGATGGCAATGACATGATCAATCTCTACCACGAATTCATCACGGACTTCGAGTCCAAGATCAATCACCTCAAGCTCGCTCACTTCGCGGTGATCGTGTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT