1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtcgttgcgatttgggtggtgtcaatcactctcttgattggtgatcccagTGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTGGAGATGGCGGCGCTACCAAGATCACCAGGATTACGCCTGTGGGAGGCGG
species | Selaginella moellendorffii |
transcript | EFJ34520 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCGCAGCGCCCAGATCGACGTCCCAGCGGCATTTGGCCTCTGCTAGCA TGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTGEST: gi|169050757|gb|FE459903.1|FE459903
genomic: ATTCGCAGCGCCCAGATCGACGTCCCAGCGGCATTTGGCCTCTGCTAGCAgtgagtcgtt ... gtgatcccagTGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTG
EST: ATTCGCAGCGCCCAGATCGACGTCCCAGCGGCATTTGGCCTCTGCTAGCA TGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTGEST: gi|70670137|gb|DN838714.1|DN838714
genomic: ATTCGCAGCGCCCAGATCGACGTCCCAGCGGCATTTGGCCTCTGCTAGCAgtgagtcgtt ... gtgatcccagTGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTG
EST: ATTCGCAGCGCCCAGATCGACGTCCCAGCGGCATTTGGCCTCTGCTAGCA TGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTG
genomic: ATTCGCAGCGCCCAGATCGACGTCCCAGCGGCATTTGGCCTCTGCTAGCAgtgagtcgtt ... gtgatcccagTGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTG
gtgagtcgttgcgatttgggtggtgtcaatcactctcttgattggtgatcccagTGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTGGAGATGGCGGCGCTACCAAGATCACCAGGATTACGCCTGTGGGAGGCGG
tcttgat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgttgcgatttgggtggtgtcaatcactctcttgattggtgatcccagTGGCTAGCGGCGGCGATGGCGATGGCGATCCCATCCGGCATTGGATCCTTGGAGATGGCGGCGCTACCAAGATCACCAGGATTACGCCTGTGGGAGGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA