1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtggattgtttggatcgatcgatctaaatttccatggatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTTCCCCTTGCCAGTAGTTCTCGGCCATGAAGTGACTGGAGAGATCATGGA
species | Selaginella moellendorffii |
transcript | EFJ34092 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAG CTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTEST: gi|169020060|gb|FE428499.1|FE428499
genomic: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAGgtatgtggat ... gatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
EST: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAG CTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTEST: gi|70670102|gb|DN838679.1|DN838679
genomic: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAGgtatgtggat ... gatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
EST: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAG CTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTEST: gi|169053548|gb|FE463317.1|FE463317
genomic: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAGgtatgtggat ... gatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
EST: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAG CTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTEST: gi|169024374|gb|FE434338.1|FE434338
genomic: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAGgtatgtggat ... gatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
EST: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAG CTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTEST: gi|169072479|gb|FE483875.1|FE483875
genomic: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAGgtatgtggat ... gatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
EST: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAG CTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTEST: gi|169033239|gb|FE441259.1|FE441259
genomic: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAGgtatgtggat ... gatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
EST: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAG CTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTEST: gi|169062295|gb|FE470485.1|FE470485
genomic: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAGgtatgtggat ... gatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
EST: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAG CTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
genomic: TATGCAAATGCCTCGGCCGAAATTTGGAGAGGTGCTGCTCAAGACGAAAGgtatgtggat ... gatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGT
gtatgtggattgtttggatcgatcgatctaaatttccatggatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTTCCCCTTGCCAGTAGTTCTCGGCCATGAAGTGACTGGAGAGATCATGGA
atctaaa putative branch site (score: 30)
atctaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggattgtttggatcgatcgatctaaatttccatggatcgggcagCTTGTGGAGTTTGCCACTCGGATTTGCACATCATCAAGAAGGATCAGCCGTTCCCCTTGCCAGTAGTTCTCGGCCATGAAGTGACTGGAGAGATCATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA