1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaagcttgcgtctttgttgcttctttcaaatgcaggaaggaaccgctcacacacaatgttttttcctcagGCCCCGGAGCACCTGCCGTCTTCAACTGT
species | Selaginella moellendorffii |
transcript | EFJ33440 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGNTCCGTCGCGGCGCATCCCTGGCACGATCTCGAAATCG GCCCCGGAGCACCTGCCGTCTTCAACTGTEST: gi|169029484|gb|FE436726.1|FE436726
genomic: CCGCCGCTCCGTCGCGGCGCATCCCTGGCACGATCTCGAAATCGgtaaagcttg ... ttttcctcagGCCCCGGAGCACCTGCCGTCTTCAACTGT
EST: GCTCTCCCGCCGCTCCGTCGCGGCGCATCCCTGGCACGATCTCGAAATCG GCCCCGGAGCACCTGCCGTCTTCAACTGTEST: gi|169054473|gb|FE462154.1|FE462154
genomic: GCTCTCCCGCCGCTCCGTCGCGGCGCATCCCTGGCACGATCTCGAAATCGgtaaagcttg ... ttttcctcagGCCCCGGAGCACCTGCCGTCTTCAACTGT
EST: GCTCTCCCGCCGCTCCGTCGCGGCGCATCCCTGGCACGATCTCGAAATCG GCCCCGGAGCACCTGCCGTCTTCAACTGTEST: gi|169095336|gb|FE499405.1|FE499405
genomic: GCTCTCCCGCCGCTCCGTCGCGGCGCATCCCTGGCACGATCTCGAAATCGgtaaagcttg ... ttttcctcagGCCCCGGAGCACCTGCCGTCTTCAACTGT
EST: CATCCCTGGCACGATCTCGAAATCG GCCCCGGAGCACCTGCCGTCTTCAACTGT
genomic: CATCCCTGGCACGATCTCGAAATCGgtaaagcttg ... ttttcctcagGCCCCGGAGCACCTGCCGTCTTCAACTGT
gttgcttctttcaaatgcaggaaggaaccgctcacacacaatgttttttcctcagGCCCCGGAGCACCTGCCGTCTTCAACTGT
cgctcac putative branch site (score: 43)
tgttttttcctc putative PPT
aatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcttgcgtctttgttgcttctttcaaatgcaggaaggaaccgctcacacacaatgttttttcctcagGCCCCGGAGCACCTGCCGTCTTCAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA