1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catcgcctctccggttcataatctccgcacaagcatcggctctgcggttcataatctccagaatcttggaagttttctcacgattctccgtctgtcgcagCTTGAATCGCGTGAAATCAAGGACCTTTCGACGACTCCCTGTATACGCCATGGGAACCTGGTCGTTCTTCCTCGCTATCGTACTCGCGAGCTTGTTCTCG
species | Selaginella moellendorffii |
transcript | EFJ32790 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ggttcataatctccagaatcttggaagttttctcacgattctccgtctgtcgcagCTTGAATCGCGTGAAATCAAGGACCTTTCGACGACTCCCTGTATACGCCATGGGAACCTGGTCGTTCTTCCTCGCTATCGTACTCGCGAGCTTGTTCTCG
ttctcac putative branch site (score: 2)
ttctccgtct putative PPT
ataatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcgcctctccggttcataatctccgcacaagcatcggctctgcggttcataatctccagaatcttggaagttttctcacgattctccgtctgtcgcagCTTGAATCGCGTGAAATCAAGGACCTTTCGACGACTCCCTGTATACGCCATGGGAACCTGGTCGTTCTTCCTCGCTATCGTACTCGCGAGCTTGTTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- tcgcctc
- - - - - - - - - - -tctccgc
- - - - - - - - - - - - - - acaagca
- - - - - - - - - - - - - - - - - - - gctctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -atctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attctcc