Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaatctttgtgaaatttcgatagctagctacattctgatgtgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGATAAATCCCATGTCACA

Basic information

species Selaginella moellendorffii
transcript EFJ32604
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169023493|gb|FE431404.1|FE431404
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169041587|gb|FE449548.1|FE449548
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169036059|gb|FE446765.1|FE446765
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169094385|gb|FE495585.1|FE495585
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169087333|gb|FE491746.1|FE491746
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169053831|gb|FE460922.1|FE460922
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169051134|gb|FE458681.1|FE458681
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169019270|gb|FE428183.1|FE428183
EST:     CGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169096116|gb|FE500276.1|FE500276
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169082303|gb|FE488046.1|FE488046
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169087154|gb|FE493101.1|FE493101
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169025097|gb|FE434697.1|FE434697
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169077299|gb|FE485601.1|FE485601
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169036890|gb|FE443850.1|FE443850
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169080654|gb|FE487175.1|FE487175
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169075645|gb|FE482031.1|FE482031
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169062067|gb|FE469152.1|FE469152
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|70670986|gb|DN839563.1|DN839563
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169074936|gb|FE483818.1|FE483818
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169088141|gb|FE493380.1|FE493380
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169041091|gb|FE450378.1|FE450378
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169053051|gb|FE462014.1|FE462014
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169061498|gb|FE469597.1|FE469597
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169032798|gb|FE438306.1|FE438306
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169019625|gb|FE427974.1|FE427974
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169097028|gb|FE498419.1|FE498419
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169047243|gb|FE456492.1|FE456492
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169088635|gb|FE491521.1|FE491521
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169087281|gb|FE491694.1|FE491694
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169030300|gb|FE440025.1|FE440025
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169102882|gb|FE505247.1|FE505247
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169035576|gb|FE445346.1|FE445346
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169094800|gb|FE492951.1|FE492951
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169088706|gb|FE491540.1|FE491540
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169087447|gb|FE492224.1|FE492224
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169105943|gb|FE504303.1|FE504303
EST:     CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: CAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
EST: gi|169075799|gb|FE482796.1|FE482796
EST:     AACAGGGCGCTCGGCGATGCCAGATCGATCCTCTCGCGAAATGCGTCG                         ACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT
genomic: AACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 103

TCTTCGGCGATTGTCCAGGTTTCGTGCCTCTACGGCGCTCGCGATCGCGGCAAACAGGGCGCTCGGCGATGCCAGATCGATCCTTTCGCGAAATGCGTCGgtagaatctt ... tgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGATAAATCCCATGTCACA




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagaatctttgtgaaatttcgatagctagctacattctgatgtgtgatccagACCGCCGTGGCCAATGACGAAGTGTACTCGCGATTCGAGAGTTCCAAGGATAAATCCCATGTCACA
                                     ttctgat  putative branch site (score: 103)
                tgaaattt  TA-rich tract