1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaatcaccagcttgttgccaaatcgaatgtgactttggtgtgttttcttgttgcagCTACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATATGAAGCTCATCCAGCAAGCACGGGATGAAGAAATCAGCTCTCGAGTTAAT
species | Selaginella moellendorffii |
transcript | EFJ32295 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATGGAGTTTGCAACGAGCTCAGGGAGCACTTTGCGCGTCTTCCATCACG ATACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATATEST: gi|169086977|gb|FE495654.1|FE495654
genomic: GATGGAGTTTGCAACGAGCTCAGGGAGCACTTTGCGCGTCTTCCATCACGgtaaatcacc ... cttgttgcagCTACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATAT
EST: GATGGAGTTTGCAACGAGCTCAGGGAGCACTTTGCGCGTCTTCCATCACG CTACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATATEST: gi|169041977|gb|FE447130.1|FE447130
genomic: GATGGAGTTTGCAACGAGCTCAGGGAGCACTTTGCGCGTCTTCCATCACGgtaaatcacc ... cttgttgcagCTACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATAT
EST: GATGGAGTTTGCAACGAGCTCAGGGAGCACTTTGCGCGTCTTCCATCACG ATACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATAT
genomic: GATGGAGTTTGCAACGAGCTCAGGGAGCACTTTGCGCGTCTTCCATCACGgtaaatcacc ... cttgttgcagCTACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATAT
aatcaccagcttgttgccaaatcgaatgtgactttggtgtgttttcttgttgcagCTACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATATGAAGCTCATCCAGCAAGCACGGGATGAAGAAATCAGCTCTCGAGTTAAT
ttttcttgtt CT-rich tract
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcaccagcttgttgccaaatcgaatgtgactttggtgtgttttcttgttgcagCTACACGCTCAACATTGATGTGGAGCGGCATGAGGATGTCCTGCTTCATATGAAGCTCATCCAGCAAGCACGGGATGAAGAAATCAGCTCTCGAGTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC