1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaggcacgagaaagataaaacttagatctttctatatcgttctcatgtcttttttttttttttttccttcttgttacttagGCGAAGTATCTGTTGCCAGACGCAACTAAGGTTCAGCTTCTTGCAGATTATCTCAGGAAGAAGCGCATCGGAGTCGTGGCACATTTTTACATGGACCCCG
species | Selaginella moellendorffii |
transcript | EFJ31704 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATCACTGCCGATGGATTCAAGCCGGAAGGAAGCTTTGCGATCGCGCAG GCGAAGTATCTGTTGCCAGACGCAACTAAGGTTCAGCTTCTTGCAGATTATEST: gi|169056405|gb|FE466984.1|FE466984
genomic: TCATCACTGCCGATGGATTCAAGCCGGAAGGAAGCTTTGCGATCGCGCAGgtaggcacga ... tgttacttagGCGAAGTATCTGTTGCCAGACGCAACTAAGGTTCAGCTTCTTGCAGATTAT
EST: TCATCACTGCCGATGGATTCAAGCCGGAAGGAAGCTTTGCGATCGCGCAG GCGAAGTATCTGTTGCCAGACGCAACTAAGGTTCAGCTTCTTGCAGATTAT
genomic: TCATCACTGCCGATGGATTCAAGCCGGAAGGAAGCTTTGCGATCGCGCAGgtaggcacga ... tgttacttagGCGAAGTATCTGTTGCCAGACGCAACTAAGGTTCAGCTTCTTGCAGATTAT
tctttctatatcgttctcatgtcttttttttttttttttccttcttgttacttagGCGAAGTATCTGTTGCCAGACGCAACTAAGGTTCAGCTTCTTGCAGATTATCTCAGGAAGAAGCGCATCGGAGTCGTGGCACATTTTTACATGGACCCCG
tcgttctcatgtcttt CT-rich tract
tttttttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcacgagaaagataaaacttagatctttctatatcgttctcatgtcttttttttttttttttccttcttgttacttagGCGAAGTATCTGTTGCCAGACGCAACTAAGGTTCAGCTTCTTGCAGATTATCTCAGGAAGAAGCGCATCGGAGTCGTGGCACATTTTTACATGGACCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA