1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagctcgattttctggtttaaagcgtgtggctgatgaatggattctttgctcagATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTACAAGGAGGCTGGCCCCAAAGGTTTGTTCAAGGGATGGGTTCCGACGCTGT
species | Selaginella moellendorffii |
transcript | EFJ31006 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAG ATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTACEST: gi|169115023|gb|FE516388.1|FE516388
genomic: TCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAGgtaagctcga ... ctttgctcagATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTAC
EST: TCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAG ATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTACEST: gi|169050329|gb|FE457551.1|FE457551
genomic: TCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAGgtaagctcga ... ctttgctcagATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTAC
EST: TCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAG ATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTACEST: gi|169099377|gb|FE500993.1|FE500993
genomic: TCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAGgtaagctcga ... ctttgctcagATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTAC
EST: TCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAG ATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTAC
genomic: TCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAGgtaagctcga ... ctttgctcagATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTAC
taagctcgattttctggtttaaagcgtgtggctgatgaatggattctttgctcagATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTACAAGGAGGCTGGCCCCAAAGGTTTGTTCAAGGGATGGGTTCCGACGCTGT
ggctgat putative branch site (score: 36)
ttctttgctc putative PPT
tttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcgattttctggtttaaagcgtgtggctgatgaatggattctttgctcagATCGATCCCGCCAAGTATAGATCTATCGGCAGTGGATTTGGGGTTTTGTACAAGGAGGCTGGCCCCAAAGGTTTGTTCAAGGGATGGGTTCCGACGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG